GO slim creation pipeline

Overview

The files and documents collected here are described in the manuscript "Automatic, context-specific generation of Gene Ontology slims" (MJ Davis, MS Sehgal and MA Ragan, submitted, 2009).

Download the method

Computational pipeline for generating dataset-specific GO slims

Download example datasets

Yeast proteome annotated with gene ontology terms (re-formatted from the GOA Yeast file)

The version of the Gene Ontology analysed in the manuscript.

Download user documentation

How to use the GO slim generation pipeline

Contact

Please contact Melissa Davis (m.davis@imb.uq.edu.au) with any questions regarding the use of this pipeline.