Ontology
GO slim creation pipeline - The files and documents collected here are described in the manuscript “Automatic, context-specific generation of Gene Ontology slims” (MJ Davis, MS Sehgal and MA Ragan, submitted, 2009)
Small Molecule Ontology - The files and documents collected here are described in the manuscript "A Semantic Web for small molecules and their biological targets" (JY Choi, MJ Davis, AF Newman and MA Ragan, submitted, 2009)
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Sequence Tools
Mosaic: a visual framework for sequence analysis using n-grams and spectral rearrangement
decaf+py: DistancE Calculation using Alignment-Free methods in PYthon
Bellerophon - detect chimeric sequences in a multiple sequence dataset
Mapwhere: finds perfect or partial matches to motifs in (protein) sequences
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To add to this list, please email r.teasdale@imb.uq.edu.au.
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